Basic Information | |
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Taxon OID | 3300006180 Open in IMG/M |
Scaffold ID | Ga0079045_1000502 Open in IMG/M |
Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5625 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Yellowstone National Park | |||||||
Coordinates | Lat. (o) | 44.7315 | Long. (o) | -110.7113 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F053392 | Metagenome / Metatranscriptome | 141 | N |
F094112 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0079045_10005024 | F053392 | GAGG | MSVPSYVTLTGPQTTVMPASFNIAASAAAGSVIQGSILAFGPQSPAVAAPQVPITEVWSIVDIYIIGSVTPDALLSIYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPSSTWFTTVTLMAANGTSAQTYTVYFSVIRAPYLPSASSK* |
Ga0079045_10005027 | F094112 | GAGG | MSQSNIAVYNRGYNFTTITNPTTAKISVNLGLTTYNYPILAIHIYIYYTSNPASGYVKAAITPLDELVTGYVGYSPTIEYFIDAYKGAMYIPLAPYEYVNITISISAGANLEYDAFLYDWMGEN* |
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