NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075446_10005264

Scaffold Ga0075446_10005264


Overview

Basic Information
Taxon OID3300006190 Open in IMG/M
Scaffold IDGa0075446_10005264 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4826
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004162Metagenome450Y
F017556Metagenome / Metatranscriptome240Y
F021394Metagenome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0075446_100052641F021394N/AYVCNVDYIGRTKVKGFTFVLGKMVKVELNLKTLKFVS*
Ga0075446_100052643F004162N/AMGETQKVATLLGEKQKIEKEIAKIQQLCDHTSNSVKSVRERLDSTSTVIRHVCDECSSIVGIPNNNDLQNFLKQ*
Ga0075446_100052646F017556N/AMSNSKFKVGQAVSFPLMGTVGSKARKGGTITKVETMYELLDDKKYFYPNGKCRGELTTIKELSKGKSKGYAYVVKTIQPNGFHPETITVEENKLKLSTKELVLNSYTIYA*
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