NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075447_10003682

Scaffold Ga0075447_10003682


Overview

Basic Information
Taxon OID3300006191 Open in IMG/M
Scaffold IDGa0075447_10003682 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6821
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010928Metagenome / Metatranscriptome297N
F022015Metagenome / Metatranscriptome216Y
F037813Metagenome / Metatranscriptome167Y
F038301Metagenome / Metatranscriptome166N
F101868Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0075447_1000368210F101868N/AMEVLIINGRRYLINTSTSDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR*
Ga0075447_1000368211F038301AGGMIKHTIMIAAMFASSNPETRLCNLQCTNHDKNVIRVSSPDIMEDPKYNDGLESGYILLCNGEAEGFTNHNTGDIVCDGTNHECSVGNTCKDGEGECYVCY*
Ga0075447_1000368213F022015N/AMYYQSKSNMTWKQAFAEVAASHLKHEIICAIASEVVGKPVENLIGFTDEQRNLVDNDYYNTTELCE*
Ga0075447_1000368215F010928N/AMATQKFMGSGQLVDRLTAQVKDRGFAMALLKKRGDMNSDGSLTTKGESRNRMTAESRAIDRAGGTGTYNAATNTVKQSL*
Ga0075447_100036824F037813N/AMNKLNLYEQLKPEYKESINEKFKTRQHSHDALIRALSDEYYFTEVKYGDAFDIMDSCDLDFLGDAFNKEPQW*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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