Basic Information | |
---|---|
Taxon OID | 3300006191 Open in IMG/M |
Scaffold ID | Ga0075447_10003682 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6821 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010928 | Metagenome / Metatranscriptome | 297 | N |
F022015 | Metagenome / Metatranscriptome | 216 | Y |
F037813 | Metagenome / Metatranscriptome | 167 | Y |
F038301 | Metagenome / Metatranscriptome | 166 | N |
F101868 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0075447_1000368210 | F101868 | N/A | MEVLIINGRRYLINTSTSDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR* |
Ga0075447_1000368211 | F038301 | AGG | MIKHTIMIAAMFASSNPETRLCNLQCTNHDKNVIRVSSPDIMEDPKYNDGLESGYILLCNGEAEGFTNHNTGDIVCDGTNHECSVGNTCKDGEGECYVCY* |
Ga0075447_1000368213 | F022015 | N/A | MYYQSKSNMTWKQAFAEVAASHLKHEIICAIASEVVGKPVENLIGFTDEQRNLVDNDYYNTTELCE* |
Ga0075447_1000368215 | F010928 | N/A | MATQKFMGSGQLVDRLTAQVKDRGFAMALLKKRGDMNSDGSLTTKGESRNRMTAESRAIDRAGGTGTYNAATNTVKQSL* |
Ga0075447_100036824 | F037813 | N/A | MNKLNLYEQLKPEYKESINEKFKTRQHSHDALIRALSDEYYFTEVKYGDAFDIMDSCDLDFLGDAFNKEPQW* |
⦗Top⦘ |