Scaffold Ga0075447_10025243

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075447_10025243

Scaffold Ga0075447_10025243

Overview

Basic Information
Taxon OID	3300006191 Open in IMG/M
Scaffold ID	Ga0075447_10025243 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2324
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031652	Metagenome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075447_100252432	F031652	AGTAGG	VQSLKIYVWGTQYFIDTYAGGLQSDCDKHGYALTVGVVPDADNFSHINHYIHRAMIDTVNNAEPTDRILFLDPECRIVKPIPEDWIQDARPILCYKIADGKLDINRYEYGHTLPGPIQMQPIFLTAQDSGWIQWWYDASMAASDPDRNVYVPHELLLELALKFNNIDIHMEHCVYNREWPQPQRVVKGSFVTADTIITHPDIHALMDPHVKHSLQDIKDSPFMPTRKLHNHFNDFETIKQIDELMYKEQHDITKWPEGTTQEGNWYCIDNWQFDPRTGRVKHRQYDAVRYHMSIDTKTNQNLNTPAVKSFFNRYGTD*

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