NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075422_10024143

Scaffold Ga0075422_10024143


Overview

Basic Information
Taxon OID3300006196 Open in IMG/M
Scaffold IDGa0075422_10024143 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2084
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055133Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0075422_100241431F055133GGAGMSSNFLQSMAVLEGARAALRVGAVSKGERVGFICDLRVESDVIHAFFTAAAEIGATPFLCMVERGRGYGPPDEFVEAIKTANVLYFSWEMANSLVIKALRQERGIRCVGFPHCRTAALLSDEAVRFPLDVLSALYPKTWDVFRCGKDVDVHITDTKGTDFRVTLTKENIEEKFAQDPRYSGQIVANKPGFVSHLPVGHGPNVLSPSEPHN
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