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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006217 Open in IMG/M |
| Scaffold ID | Ga0081461_1025145 Open in IMG/M |
| Source Dataset Name | Combined Assembly of all intestinal viral_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Texas Southwestern Medical Center |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4857 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | UT Southwestern Medical Center, Dallas, Texas, USA | |||||||
| Coordinates | Lat. (o) | 32.815891 | Long. (o) | -96.846336 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013656 | Metagenome | 269 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0081461_10251456 | F013656 | N/A | MGDIMGDKIYKRINKDEIETTINVLYLEEIISIYTNKPDLQRKLNKLLGEPVKEYKIKRSIAGSVWEMPFKDKTRISKMILKANIFEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |