Scaffold Ga0081461_1133258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081461_1133258

Scaffold Ga0081461_1133258

Overview

Basic Information
Taxon OID	3300006217 Open in IMG/M
Scaffold ID	Ga0081461_1133258 Open in IMG/M
Source Dataset Name	Combined Assembly of all intestinal viral_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Texas Southwestern Medical Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1019
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Source Dataset Sampling Location
Location Name	UT Southwestern Medical Center, Dallas, Texas, USA
Coordinates	Lat. (^o)	32.815891	Long. (^o)	-96.846336	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081461_11332581	F039198	AGGAG	MQITSNEISNIKYVQIYLTNEELEKQETKEVIEKYKKDKYSVAIFVTGKENYPEILKKIITKQVELNRNVC*

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