NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068504_1129200

Scaffold Ga0068504_1129200


Overview

Basic Information
Taxon OID3300006304 Open in IMG/M
Scaffold IDGa0068504_1129200 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1638
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006198Metagenome / Metatranscriptome379Y
F011620Metagenome / Metatranscriptome289Y
F072734Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0068504_11292001F072734GGAGMSMMKFDDSKIKEIRKRKEQGLPSPPSGDVVEQSKNAKGGSELIYQRVKERVPDDLWNYFQIILSRVREYEDKPKILWFQDTSKDFRF
Ga0068504_11292002F011620GGAMFDKILQAVLRFFGKEKPELPTEENNESLEALERIEALDKIGESS*
Ga0068504_11292005F006198GGAMEVELDVECNNCNAKYTMIYDSDDIQTRQEEHAFHCAFCGILMEPYYDEFFEGD*
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Biomedical Sciences Research Center "Alexander Fleming"
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