Scaffold Ga0068468

Basic Information
Taxon OID	3300006305 Open in IMG/M
Scaffold ID	Ga0068468_1000605 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006305 Open in IMG/M

Scaffold ID

Ga0068468_1000605 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47138
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (43.48%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

47138

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (43.48%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017658	Metagenome	239	Y
F033841	Metagenome / Metatranscriptome	176	N
F034215	Metagenome / Metatranscriptome	175	Y
F036741	Metagenome	169	Y
F070220	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_100060510	F033841	AGG	MEDLKPETIKIVTPNPTNFRYSYLVTPDEYKGVKKYKAECLIKKGIMMKDEMGREVDAVEHIIEQLEGLLDRWKAALKEYYPDRKFTLTKNKFGEPSLPWTTEDDYLVIKTNKKAGGVKQNGDVWTNPPVTFWANEDPLRLMSDEEKKEYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRKHVEWTGSPDFEAAPPSSYEEKSTASTAADF*
Ga0068468_100060519	F034215	GGAGG	MPTKKSSRKRDEDGKFVSEKAIVSELGVNEENPVPEKSGDVITRHGSTIHYS*
Ga0068468_10006053	F017658	N/A	MNFMEEINEETQAMLKQISIRKAEKKAVAKKRIAELKKLIKFWEEDL*
Ga0068468_100060542	F036741	N/A	MNHKEFFKILVGNPPPEIEFEIEVKQRETEQLPDEAIRAYCLDLVKYTKLQDLLLTSAIMRISEIETKLYRYEKGMELYKKVRKLGFVGKIKYLLFGKTDKK*
Ga0068468_10006055	F070220	AGG	MKCTKCESLDIKVRETIYRKAEQTKGFRNKSITPYVYRRRVCLSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLTPN*
Ga0068468_100060557	F017658	N/A	MGVITMNFMEEINEETQKMLKQISIRKAEKTSVAKKRIAELKELIKFWEESL*
Ga0068468_100060558	F070220	GGAGG	MKCTKCESLDIKVLETKHRKAEQTIGFRNKSITPYVYRRRVCLSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLTPN*
Ga0068468_100060562	F033841	AGG	MEDLKPETIKIVTPNPTNFRYSYLVTPDEYKGVKKYKAECLIKKGTMMKDEMGREVDAVEHIIEQLEGLLDRWKAALKEYYPDRKFTLTKNKFGEPSLPWTTEDDYLVIKTNKKAGGVKMNGDVWTNPPVTFWANEDPLRLMTDEEKKEYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRKHVEWTGSPDFEAAPPSSYEEKSTASTAADF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068468_1000605

Overview

Ecosystem & Geography

Associated Families

Sequences