NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068468_1001171

Scaffold Ga0068468_1001171


Overview

Basic Information
Taxon OID3300006305 Open in IMG/M
Scaffold IDGa0068468_1001171 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7021
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004819Metagenome / Metatranscriptome422Y
F036279Metagenome / Metatranscriptome170N
F062840Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0068468_100117111F062840N/AMYNKFKKGLIGNNAYLNWKTYIKEVASVCTYRRVDNTMDDKANLKDMDKHRQLY*
Ga0068468_100117120F036279AGGMKGTKHILKIVFIIISFVSITACSVPFANGVNGKDIIKIANAGKNIKNITKEGINEELITETKNILRDIQYGGKAQR*
Ga0068468_10011718F004819AGGAGGMEFYPKDKDPRLDERSARFHARVLKEDLATLPFVLDTCNRDINVARATTYVTWDHDKEMWCEVDHLMMNFYIKAKTSETREELEDKINRGVVELLKGPRYYEQAKVYCMIDMNYPEDESIYDLVKKPKKDRNPYCVAGDEGDITYHVTLHVQECNATDLAIYDEKDRGDFFDLSGNNLESPMADLERIVNGN*
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