Basic Information | |
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Taxon OID | 3300006305 Open in IMG/M |
Scaffold ID | Ga0068468_1013375 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3953 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003751 | Metagenome / Metatranscriptome | 470 | Y |
F027869 | Metagenome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068468_10133754 | F027869 | AGG | MDTKKAKKAVKMAEQAQDLMDLEDAMLEAAQPDLQPDDGYINPMGRIGTVPPSSYSLGNMLDGTTTQSVINPET* |
Ga0068468_10133756 | F003751 | AGGAGG | MASYKSDAGAILEPGNQINRLSSFNHEGVKGWPGVEAFEQIGFVKINNASADKASFKSFDITVPSPDRRVSDRVRDDRTSLVVKASSARPAYVYGASIALAQDDPSGGLPSFPASPITADLVGTNTEVLLLGPNNGGSPFGIPSTQQNGLAAATSSLAFSGTTIAQGTGAVTAAKLPFWTVVTGGGITAANAANSMMFKVTADTTFKVFNVNAVTDTSVNGDGVSISADDITAGKAAYLVCRVNYLRPAAEVAWSDISSFIDFASQVGGTDS* |
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