Scaffold Ga0068468

Basic Information
Taxon OID	3300006305 Open in IMG/M
Scaffold ID	Ga0068468_1048375 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006305 Open in IMG/M

Scaffold ID

Ga0068468_1048375 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6663
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (69.57%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

6663

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (69.57%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001504	Metagenome / Metatranscriptome	681	Y
F007173	Metagenome / Metatranscriptome	356	Y
F014025	Metagenome / Metatranscriptome	266	Y
F023367	Metagenome / Metatranscriptome	210	N
F028529	Metagenome / Metatranscriptome	191	N
F029472	Metagenome / Metatranscriptome	188	N
F036278	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_104837510	F001504	GGA	MTCNTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVQNAELSMRLYDPELTETIGFYNK*
Ga0068468_104837511	F007173	GAGG	MQTTTTKAIISRDKIMEYIHEERDLLMGLQDDLSDMLYATGKFSITLDEVVQNHMPYIPLYLIQNEDEIKKAFPDRITDNEYIFIYDRGMTPNEITLNVEWID*
Ga0068468_104837514	F028529	GGGGG	MRLSKFLTENLEEKTVNLTLTFDERSELLKHLEMFDEHIDQLHPLVESVQDKLLGID*
Ga0068468_104837516	F014025	GGA	MKLDNYDLSTIHYALYYYMDNADLDEDEMEWIGLLREKVDSIMVSQINYDKECG*
Ga0068468_104837517	F001026	GAGG	MKHTIELDDLELTALITHLEGQNEIMSESRLNCSNPSETPDREEVLLNKVYEKAFTIGWDADKNPNNDFDLIKNQDRIYQYKMYPQVYGQMP*
Ga0068468_104837522	F036278	GAGG	MTDTRGYQPEGVKYTFPDDDPYQEGNEVYYNMVDFLDDSEVHQIWEIVGKALDRNNIVTSDNESLSVRVYDELSDED*
Ga0068468_10483753	F029472	AGG	MLSRKTIENLTDKLMVGVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITEIQQHLRCSPNHSQVHYPRCPL*
Ga0068468_10483755	F023367	AGGAGG	MAMEESKVTKMKKFIFEEKFISYADVEIYAENEEDARRQFQNGNYQYYDVSDFTDGHELINVREETE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068468_1048375

Overview

Ecosystem & Geography

Associated Families

Sequences