NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068468_1052208

Scaffold Ga0068468_1052208


Overview

Basic Information
Taxon OID3300006305 Open in IMG/M
Scaffold IDGa0068468_1052208 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6214
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003869Metagenome / Metatranscriptome464Y
F014748Metagenome / Metatranscriptome260N
F023367Metagenome / Metatranscriptome210N
F034213Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0068468_105220817F023367GGAGGMKKFRFTEKFISYADVEIYAKDEEDARLQFQNGNYQYYDVSDFTEGHQLIEVVEVGIDE*
Ga0068468_105220820F003869GGAGGMAKTKYKRTHFYSICSMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNIIDKSLEVN*
Ga0068468_10522084F034213N/AMTNDSIPTKQRIKNLKNFAYLDKSFKEWLTTCPRDYIWQIDDVTKEDGHYEGTFTFRRTLTYKRTHGILR*
Ga0068468_10522088F014748GGAGGMEIGDRVQTLNTFTPITGEIVDMYKNRVTIADDDAETVDQLLSFHADELEVI*
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