NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068468_1066912

Scaffold Ga0068468_1066912


Overview

Basic Information
Taxon OID3300006305 Open in IMG/M
Scaffold IDGa0068468_1066912 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2025
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F002137Metagenome / Metatranscriptome590Y
F014025Metagenome / Metatranscriptome266Y
F058219Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0068468_10669123F058219GAGMKISSEKQLKRDLKYLKKHLDDDKEINQVMEHIEKVGIGSAEYFCEEFVFIPDGETPEQVARLHDPLYFDISEFNYHNWEGN*
Ga0068468_10669124F014025GGAMNQLDNYELSTLHYTVSYYIDNANLDEDENEWLNLLKGKIDNIMQTQAKYDMECG*
Ga0068468_10669126F001026AGGAGGMALHKLVLDDMELTALITHLQGQSEMMCESRANSSYPDELPDRMEVLLNLVYAKAFTIGWEAHKNPKVDFNLNQNQDRIYKYK*
Ga0068468_10669128F002137AGGAGMKVKELIKALSYYHGDDDITFYFLKNDTLTNCQLEDIGFFSDTMGVEFTIQDTSEVKEEVDV*
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