Basic Information | |
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Taxon OID | 3300006305 Open in IMG/M |
Scaffold ID | Ga0068468_1077659 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2445 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006348 | Metagenome / Metatranscriptome | 375 | Y |
F010476 | Metagenome / Metatranscriptome | 303 | Y |
F023878 | Metagenome / Metatranscriptome | 208 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068468_10776594 | F023878 | N/A | MTGIELFILIGGCYALYTVGMAIATELDYRALNQKRDSAYDS* |
Ga0068468_10776597 | F006348 | GGAGG | MNKFYIVENLEFDPKFKTEKEIEDLKFKRDQAIGVWSSEGKTEDERISNLFDKVQNYMGVYLCSLEYCNNRPHPLTAFM* |
Ga0068468_10776599 | F010476 | N/A | LLALGQLNLYNSIIHHKTNFKIMFDYKITAYNKLGKVQETENLFCPPDEIDDVMYTLSEQYGYAEALDTMDTHCGEYGERPLSLGERRYF* |
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