Scaffold Ga0068468

Basic Information
Taxon OID	3300006305 Open in IMG/M
Scaffold ID	Ga0068468_1079070 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006305 Open in IMG/M

Scaffold ID

Ga0068468_1079070 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4015
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4015

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (87.50%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001479	Metagenome / Metatranscriptome	687	Y
F002137	Metagenome / Metatranscriptome	590	Y
F007173	Metagenome / Metatranscriptome	356	Y
F020546	Metagenome / Metatranscriptome	223	Y
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_107907012	F058219	AGGAG	MSKSKKQLKDNLKYLKKHLDNDKDINQVIEHTKKIGISSAQYFCEEFVFIPDGETPEECARFHDVEYLDITEFNYHHWIGNKMEDY*
Ga0068468_107907013	F020546	GGAGG	MTTKTDPNQNYTINEFYIKVKGDYGKEKTVRVNDMGDKLLTLITDLGWEYQRMSMSGKQVFDEIHQLLGTIKEDEVYMEI*
Ga0068468_107907015	F001479	AGGAG	MSKEMFFLCDVYDAWLSKNKLPHRCASEILYGADTKGRLTQNQSYWLESFISTWDVIAQNT*
Ga0068468_107907016	F007173	AGGAG	MQTITKAKISRESLMEYIHEDRDLLMGLQDDLSDMLFATGKFSITLDEVVNSFMPFFPLYLFENEEEIRQAFPDRIDDDENLLLFDRDLTPDEISLDVDWIK*
Ga0068468_10790704	F001026	AGGAGG	MKHTIELDDLELTALLTHLEGQNEMMCESRLNSSNPSETPDREEVLLNMVYSKVFKIGWDADKNPNNDFDLIKNQDRIYQYKMYPQVYGQMP*
Ga0068468_10790707	F002137	AGGAG	MRVTNHINKSKMKVREVIEALSYYDGDDDITFYFLKNDTLTNCQVEDISFYSDTMGVEFTIQDTSEVMEEVDV*
Ga0068468_10790709	F001026	AGGAGG	MAKHTLELDDLELTALITHLEGQSEMMVESRLNCSNPRELPDREEVLLNLVYAKAFTIGYEADKNPKVDFNLIQNQDRIYKYK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068468_1079070

Overview

Ecosystem & Geography

Associated Families

Sequences