NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068468_1084742

Scaffold Ga0068468_1084742


Overview

Basic Information
Taxon OID3300006305 Open in IMG/M
Scaffold IDGa0068468_1084742 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006348Metagenome / Metatranscriptome375Y
F010476Metagenome / Metatranscriptome303Y
F053343Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0068468_108474210F053343N/AMDWQLYNQGSVTNLPRQVGLGGYNEYIKRNLSLHSNHHSIMKNPQAHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREDDFINAHFQVITYS*
Ga0068468_10847423F010476N/AMFDYKIVAYNKLGKVQETENLFCAPDEINDVMFTMSEQYGYAEAYDTMDTHCGEYGERPLSLGERKYF*
Ga0068468_10847425F006348GGAGGMVTENTPYRNKFYIVEDLEFDPKFKNEKEIEDLNFKRDNAYGVWGARGRNEDERQNDLFNKVQDYMGVYLCSLSFCENRPHPLTAFK*
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