Scaffold Ga0068468_1141880

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068468_1141880

Scaffold Ga0068468_1141880

Overview

Basic Information
Taxon OID	3300006305 Open in IMG/M
Scaffold ID	Ga0068468_1141880 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1548
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016980	Metagenome	243	Y
F019152	Metagenome	231	N
F053344	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_11418802	F016980	AGG	MKYKELLNQLQHLSKEQLELETLVFIRDKEKFVSLKSGLFFVTEFDEYEEDLETDQPYFSVSFV*
Ga0068468_11418803	F019152	AGGAG	MEHTKGILLECNLSEEEINTVIEALSRDYVENDPEILEKEYQLQGKLREIISTFYTKIDAQKFTQMQVQSVKGSTL*
Ga0068468_11418806	F053344	GGAGG	MNRKVFPVELYRRVLKRAKLDEDFYHAIISEYIEPLDEHYELHNLEESVTDWEYENTSYVDSLLTTGN*

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