Basic Information | |
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Taxon OID | 3300006308 Open in IMG/M |
Scaffold ID | Ga0068470_1230918 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1539 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002348 | Metagenome / Metatranscriptome | 568 | Y |
F028833 | Metagenome / Metatranscriptome | 190 | Y |
F030785 | Metagenome / Metatranscriptome | 184 | Y |
F090512 | Metagenome | 108 | N |
F092216 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068470_12309182 | F092216 | N/A | MTKHYDRFDLEEEIMNIWQTEDDLDAVVHRMMEDPDPITKKEIANFLISVGRLHGLRCQKLFDIFEKMVIDKCFVCKGTSLDYRGVPLDDDEKYDYPKSEDEDAMQGNFWPSPDNGLVH* |
Ga0068470_12309184 | F002348 | N/A | MNLNIKDKDKLFKYGGWLLSFLTIAIGASFLWPHFHVALLGFALIYLGVRIFNFSTFEEYKEKRVKLLNKLLD* |
Ga0068470_12309185 | F090512 | GGAG | MKLRYIVGIAYLSYIGMMGGTIIVEAIIVGLVLGMYDFLFSDRMI* |
Ga0068470_12309186 | F028833 | N/A | MDSKKVTYMWSDAVIDNIARKVAEEPMEDVPQHVIDEERGDMIRQMRKEQAQMEMYDDPYLNWSGHR* |
Ga0068470_12309188 | F030785 | AGG | MRTATVEILEKGEKVLGSRTSGEYMVRRFEDGVEMGGEFHYTLVEAGAAVRNWEKFGIKEE* |
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