NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068470_1230918

Scaffold Ga0068470_1230918


Overview

Basic Information
Taxon OID3300006308 Open in IMG/M
Scaffold IDGa0068470_1230918 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1539
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F028833Metagenome / Metatranscriptome190Y
F030785Metagenome / Metatranscriptome184Y
F090512Metagenome108N
F092216Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0068470_12309182F092216N/AMTKHYDRFDLEEEIMNIWQTEDDLDAVVHRMMEDPDPITKKEIANFLISVGRLHGLRCQKLFDIFEKMVIDKCFVCKGTSLDYRGVPLDDDEKYDYPKSEDEDAMQGNFWPSPDNGLVH*
Ga0068470_12309184F002348N/AMNLNIKDKDKLFKYGGWLLSFLTIAIGASFLWPHFHVALLGFALIYLGVRIFNFSTFEEYKEKRVKLLNKLLD*
Ga0068470_12309185F090512GGAGMKLRYIVGIAYLSYIGMMGGTIIVEAIIVGLVLGMYDFLFSDRMI*
Ga0068470_12309186F028833N/AMDSKKVTYMWSDAVIDNIARKVAEEPMEDVPQHVIDEERGDMIRQMRKEQAQMEMYDDPYLNWSGHR*
Ga0068470_12309188F030785AGGMRTATVEILEKGEKVLGSRTSGEYMVRRFEDGVEMGGEFHYTLVEAGAAVRNWEKFGIKEE*
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Institute for Fundamental Biomedical Research
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