Scaffold Ga0068471

Basic Information
Taxon OID	3300006310 Open in IMG/M
Scaffold ID	Ga0068471_1081127 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006310 Open in IMG/M

Scaffold ID

Ga0068471_1081127 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6857
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6857

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F021393	Metagenome / Metatranscriptome	219	N
F087318	Metagenome	110	N
F089050	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_108112712	F089050	AGG	MVELNHNVVSFNSDTLIKGSHGVLVNVYVSKTGSGSNKVEFRNGTTASAPVEFTIFTAAQGTYVGINRR
Ga0068471_10811273	F001235	N/A	LATKLNVDTGGLDVGKKLWERHQADEYTRVDNYKEAICLNCFSKDATSATIVDICGECAGKRGREPLLAKIADKMYGLCFFCGKHKFNIEQINARFCRKCHRTIANHTKAYNKAGGIYGNPFWTAMKKKNGKDWKEIFTKNLGNRR*
Ga0068471_10811274	F087318	N/A	MGISVHVYETVDEYVLRNKHNISDKLEVNEAALSLLDIWITPDDKLMVVCNCENFFDRPDVSRSISCFQKNNIHKYLKGDEKLVKYDDVEFDPKTENIQFFKKRLRKAPIFFRVGRFWGNKPRKTMKIDWSKKFFNIKLNRIEFILFDPKTISINLKPKRKEEGYKIDSKGNLGKKISKNDMGIPKNRG*
Ga0068471_10811279	F021393	AGGA	MVNEDNSNEQVEATEVAKSDDAVQRVETEKSFQETVKSGFDTLTDVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPRDPYPQGTQAGLDDDRNGEGKPISDKGGLKMQKKSDDTELIEKAEHTFSTETPRPNAALETVDKSIKDTSMILKDARAEGFEGLSTVARNILNGKYYVPSDDEVRGF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068471_1081127

Overview

Ecosystem & Geography

Associated Families

Sequences