NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1098727

Scaffold Ga0068471_1098727


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1098727 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6418
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F003122Metagenome / Metatranscriptome506Y
F008155Metagenome / Metatranscriptome338Y
F018198Metagenome236Y
F033080Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_109872710F008155AGAAGMTPEHQHLAALVYDIGLKKQIEERVEAKYSKRIEYLVNANNELMYELEQRELELITVESELVTVEKEC*
Ga0068471_109872711F018198N/AMKDKKNLATVRIYIDGKEMLYSHQNIVTAIDSFLPYLTNDDLDDMMKTLSTLKEHRRQKEYLALLEAREKSIQKNRHDT*
Ga0068471_109872713F002348GAGVETKKEKWMKYGGWTLSVIAIISGASFIWPHFHVALLGFALIYLGVRIFNFSTFEEYREKRIKLLHKLMD*
Ga0068471_109872715F033080AGGAMLEYVHRIAEKVANEPLEDELRNWIIGETEDGHMPLVRKPQHVIDEDRGDEIRQMRKEQAQREMYDDPVMNWSGLR*
Ga0068471_10987274F003122AGGAMIELLIFGLVLLSVICLWLMIEGRKSPKFLVWFIPLVLILVSSTYVTYTSILGYPKVEKPKEGLYLKHYIDEPNWIYLWVVYKEKIPISYQLVYSRETHKALEGVKEKSEQEGKFMVLREKEEGVGNKEGKKEQDGGITIGGDISFYEWDYKSNSQEKNPEENR*
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