NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1101650

Scaffold Ga0068471_1101650


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1101650 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3464
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021181Metagenome / Metatranscriptome220Y
F034348Metagenome / Metatranscriptome175Y
F068939Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0068471_110165010F068939GGAGGMKQYEKYADTALSIVTYIPRLCVGIYNAVERHMPATLECNYEVKRKGYDIVRKKEEKDGTETNS*
Ga0068471_110165011F034348AGGAGGMEQKQTVKAPMSERVTEKVIPLTKWFAEQYFQTAELMRSDPRYKELPSYNQTSCIATVIIATNAALDSDRAKKRAEKMIEISNREDQAKTA*
Ga0068471_11016506F021181AGGAMRILILIQLLAGFVLAFLGVIIMFHMYEVWLGLGITLVGFYAVIRATHHHVEES*
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Institute for Fundamental Biomedical Research
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