Basic Information | |
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Taxon OID | 3300006310 Open in IMG/M |
Scaffold ID | Ga0068471_1177164 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3999 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F015611 | Metagenome / Metatranscriptome | 253 | Y |
F027651 | Metagenome / Metatranscriptome | 194 | Y |
F047304 | Metagenome / Metatranscriptome | 150 | Y |
F062152 | Metagenome / Metatranscriptome | 131 | Y |
F105352 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068471_11771641 | F015611 | AGGA | METTYKEFMEAKLKSWKDMKDRNVLKAAEKFKKKMKSGNVLGYTQAHGEFTIFRNEKEWNDSVKHGKDMQWLRVE* |
Ga0068471_117716410 | F027651 | N/A | MKIKNLVQKQLKWEVVGLANAVNKNYHGWLSCVTDKKEYCVESDKFGHGFGVFSGPKYYRIEASQKSGCNGIIDQKNSKMFSAAHKENHVWGFVVKADSVNHNRGDILTRNYEKVGNVLNGNTANLGMPNSHYPNYTDCWAGADIW* |
Ga0068471_11771644 | F047304 | GAGG | MEIKAQNWGAVITKNMVTEKELKRIKKEGGFVKGKTRKAQGSKNARWGQCE* |
Ga0068471_11771647 | F062152 | GAGG | MGPHYTNELINHINKLNEETRARGAVGFLTNDPDHWAGYGVFNIGQFQDYLEREYQHNMRKEERRNY* |
Ga0068471_11771648 | F105352 | AGG | MSYCGKIRKDKENSYKLEIPRNQFDRIADAFEHQVIDVNGYDVDKDTVIFTVSEKQRLWFEKIAKSKNIKWKGKVKVNPYYWITEMFLLNNIQKHLVK* |
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