NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1209021

Scaffold Ga0068471_1209021


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1209021 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2167
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004418Metagenome / Metatranscriptome439Y
F027651Metagenome / Metatranscriptome194Y
F047304Metagenome / Metatranscriptome150Y
F099435Metagenome103N
F105352Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_12090211F047304N/AMEIKAQNWGAVITNNMVTEKELKRLKKEGNFSKCPTRKAQGSKNARWGQVGK*
Ga0068471_12090213F105352GAGGMSYCGKIRKYKSDSYKLEIPRAQFDRIADAFEQQVIDVNGYDVKKDTVIFSIKEKQRLWFAKYAVQKTIKWKGKIKPNSYNWICQMFLPHEIEKYLVK*
Ga0068471_12090215F004418N/AMKIKNNKIINWLKDDWKNNRFRLFCETIGSLCFIGIYVLMAWYGDSVSIATIFGIQIVGSTLHIINAYLRNSVNLMVLNIVVIAIAVFGIAKMYLY*
Ga0068471_12090216F027651N/AMNKSKTIKNLVPMQLKWEVVGLANSVNKNYHSWLECVTTTSEYIKESDLFGHGFGVFRGPKYWRIEASAKSGCNGIIDQKNCTLYSGTAHKENHVWGYVVRKDSLKHKRGDLLTRNYEKVGNVLDGEKANLGMPNSQYPNFTDCWAGADIW*
Ga0068471_12090217F099435AGGAMTLMCKDSTLKEINNLGKKYGDPKRQEALLYHVKNCSSYVVSPNDNEHWLCGSTIVTHWAHDTGYSRKYYGLAFPDNFESWSFHNDELAGEAFETHHELENY*
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