NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1240265

Scaffold Ga0068471_1240265


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1240265 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3539
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005399Metagenome / Metatranscriptome402Y
F006146Metagenome / Metatranscriptome380Y
F008341Metagenome / Metatranscriptome335Y
F015662Metagenome / Metatranscriptome253Y
F078830Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_12402651F008341AGGMSETLRKIVVETMIPAKFNFMARDLNGSVHVFENEPNLDYGTNKNPLPCDMWDDPSGGDTMPVSFKTSTDAADLTEELGDWRDSCVGI
Ga0068471_124026510F005399AGGMKTAIELDVFQEVKLEENTGEIVMRPMAEMMDAPLDFIDEEDEPKWTPLFQVLTETIIDPFIVPASTEVPNEKEYHMMVAVSEDLFRVANDFARKVEGLHTIDPKEYQERMSRFEQGMLWPEEDTKL*
Ga0068471_124026512F006146N/AGKLQQLFLKLLLMEILWVVIQKSKDLSIDYSMIITTATMLIVQALVVSWIVFTTPEPCPRKYRVIQEQGGMLASPVDIHRYCELDYGGKFVLKDEYKE*
Ga0068471_12402652F015662GAGMGIMKKQLIEELIEDENSQIDFVEISSEESARVELEADMARERARERIQMEMYDDPYLNWSGHR*
Ga0068471_12402659F078830AGGAMIGRKVVHKTNDLKNALKTISQIFRDGHTDVYLYGGKFGSWWK*
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