Scaffold Ga0068471_1492243

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068471_1492243

Scaffold Ga0068471_1492243

Overview

Basic Information
Taxon OID	3300006310 Open in IMG/M
Scaffold ID	Ga0068471_1492243 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1334
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002415	Metagenome	561	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_14922431	F002415	AGGA	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTHHSGTNVQDYCGKDSYIGREKGFESYHKELKDCEIRIAVYRDPVDKIIAGFYYCQEIKPHLNNLDLFLDNYQHHLKDNYIRIHCRTNTDMLGPDPSIYTHVWNMKEIDTKLLPFLEKLGGKKIQKTRLREH

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