NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1559179

Scaffold Ga0068471_1559179


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1559179 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3350
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002453Metagenome / Metatranscriptome558Y
F004868Metagenome / Metatranscriptome420Y
F005314Metagenome405Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_155917912F005314AGGAMVKPIDITNTVIVPKPQPRYDKLKSFFIGRAPMDSIDEGGVEVEANPKDKIKQPHLDNSVIEDTEWKDLY*
Ga0068471_15591794F004868AGAAGMKFVIILLLSTTGLERIELKTSGLNCGEIATAWREVNTTYYEGPNQGNFTSDGKLMIGHICEN*
Ga0068471_15591799F002453GGAMDPVQYPKLYSSWYECSRDAHTESAKLLSKMGYRNANLYKVGMKYHCKAVQTY*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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