NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1567540

Scaffold Ga0068471_1567540


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1567540 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2240
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F004768Metagenome / Metatranscriptome424Y
F012919Metagenome276Y
F051476Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0068471_15675402F012919N/AMEYIMKISRKKLNLEISKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTVSDTPTTKQQISYVEKHSL*
Ga0068471_15675404F000615GAGMCRIRSFYECSDGTMGFAEMVVSYEEDIAGLIRHWGTGGRMVITEHIDLV*
Ga0068471_15675405F051476GAGGMTYWKVKLIIKEKLHKSELFESLAKARLWSMREAKLAVADRLFNTTDIVAEITSHEFA*
Ga0068471_15675406F001048N/AMSLHNMKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKDFNRIELLVRKRVRWELGSEGMAVWDACGYKDIPTLARAYRIL*
Ga0068471_15675407F004768AGGMKTATIEILEEGETIFGSPTNGEFFVRRYEDGEEMGGGFFKTMEEAETCVREYQQEMKT*
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