NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068472_10234277

Scaffold Ga0068472_10234277


Overview

Basic Information
Taxon OID3300006313 Open in IMG/M
Scaffold IDGa0068472_10234277 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2309
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F008561Metagenome / Metatranscriptome331Y
F013649Metagenome269Y
F024888Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0068472_102342772F013649N/AMSSILNRLSILERLPTHQRMTARDNAGKKSKKPKKKHYEEHFNKNWDADLWE*
Ga0068472_102342774F024888AGGAMKIDLKNIHKIVGEMVDAIHKKEMKGKTPDEFAQERGFDNWLEYAAWSRHTGGDYHMMEMMLKSKWKEQDPEEFARQKKIEGDQRTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGESVEYRW*
Ga0068472_102342775F001048GAGMKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVNKRVRWELGSEGMAIWDACGYKDIPTLAKAYRIS*
Ga0068472_102342776F008561N/AMKFEKLIEHYERAIGFESTVKGVPMSEENLELCRRFVTDIHDCPRKDVRVMFRGPRTSTANATIKKDARSFDVYCTPR*
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