NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068472_10702636

Scaffold Ga0068472_10702636


Overview

Basic Information
Taxon OID3300006313 Open in IMG/M
Scaffold IDGa0068472_10702636 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)963
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008914Metagenome326Y
F020257Metagenome225Y
F099863Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0068472_107026361F020257N/AHECLFGGYNPIPIGIPPESLNPPHYDLHEYNPEDRKRADSWYYYATSAEDYEKAKKENYAMSYWKPDCGYVCFVGENYKIKEIDYGVIPIGDLRPPSGAYALQEALKGGHDRVEVFGFDSIAGVFSTTSQLAYKEHDSSDDKIIQDRLDKWMTFYKTVTEHYNEIEIIWHKEKENN*
Ga0068472_107026362F008914AGGAGMTVLFSEQIEAQRKATIEECRKWVKGWEADQREMVLWILEEEVRHDKLMDFVHEDGSKTKPEKLN*
Ga0068472_107026363F099863GGAGLKKEEEELAAIKKRERIFDFFWTLEEQHTILGLLKGRKMKKELKEHLKEKEVKNV*
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