NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0068473_1173290

Scaffold Ga0068473_1173290


Overview

Basic Information
Taxon OID3300006316 Open in IMG/M
Scaffold IDGa0068473_1173290 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5021
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001334Metagenome / Metatranscriptome720Y
F003285Metagenome / Metatranscriptome496Y
F006198Metagenome / Metatranscriptome379Y
F011620Metagenome / Metatranscriptome289Y
F072734Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0068473_11732901F001334N/AVCYEQEYLQINADDSIEQKLSGEWINKSRSTWKATDDEDNTIEIHNDGHDPELNGESWAVHTNTFAPKAFAFFCKQFIKEVKPSEVTHARTRIYPSTSN*
Ga0068473_11732902F003285GAGGMPEQESIHQLQTEIQTLKIKDEFRTKELDALMNKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGIATAIAWLLTNIIPKFISN*
Ga0068473_11732905F006198GGAMEVELDVECNNCNVKYTMIYDSDDIQSRQEEHAFHCAFCGILMAPYYDEFFEED*
Ga0068473_11732908F011620GGAMIDKIIQVVLKFFGKEKLEPPTEENNESLEALERVEALDKIGEPS*
Ga0068473_11732909F072734GGAGMSMMKFDDSKIKKIRKRKEQGLPPPPTDGDVVEQSKNAKGGSELIYQRVKERVPDDLWNYFQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.