NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099623_1000166

Scaffold Ga0099623_1000166


Overview

Basic Information
Taxon OID3300006322 Open in IMG/M
Scaffold IDGa0099623_1000166 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44097
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (94.92%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F036281Metagenome170N
F043991Metagenome155N
F051214Metagenome144N
F071329Metagenome122N
F081456Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0099623_100016631F081456AGGAGMFEEPPIYYILIFLIVFGAISFATWLVWLTSITFFAKLVVTAIGFLLAAMTVILYTISAE
Ga0099623_100016645F071329AGGAMLPVAKIIISGLTSIGAGMIASKFTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0099623_100016646F051214AGGAGMPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVISNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIV*
Ga0099623_100016647F043991GAGMSKKNPSVIDYFSINGDVIEEANEFDGISLEDWIDKRSSIKPSWTGQYSRQMHFDLPDDTEVSFYLTLNVVYADIIFADGVRTILFKCRQKKNLTRFISRVLEMANLGPKHVHPDFRA*
Ga0099623_100016649F027205AGGAVASRLIVSADDILKAVKKSEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHIEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0099623_100016650F036281AGGAGMITLIKVDKGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWVMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYELRQYHVKSFMRVPGSTDLWITAEREHGRWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF*

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