NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068477_1144788

Scaffold Ga0068477_1144788


Overview

Basic Information
Taxon OID3300006326 Open in IMG/M
Scaffold IDGa0068477_1144788 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3487
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024128Metagenome207Y
F047304Metagenome / Metatranscriptome150Y
F054947Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0068477_11447881F047304GAGGMEIKPQHFGAVITTNMVTEKELKKLKKEGKIHKCPTRKAQGSKIRWGKIG*
Ga0068477_114478810F054947N/AMQMISKNKIGKIFQDFNNEILEELIPKDMVVPKLRMQFSMQNLSWLCRNLQIKNKQHPEIKQTMAKLNTLRMKILLKGK*
Ga0068477_11447889F024128AGGMNINCTHLSEKPKNYKERGNASLSDNLKYINDSVSHVEINRYQGAGPIMYCVTAKALTINVVTGKKAFVVWAVQEHEDFETAVQNAKDELRNRICMGAPVLQHASPDEDVKNLVEY*
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