Basic Information | |
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Taxon OID | 3300006326 Open in IMG/M |
Scaffold ID | Ga0068477_1154947 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2973 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 770 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F013899 | Metagenome / Metatranscriptome | 267 | Y |
F043989 | Metagenome | 155 | Y |
F062843 | Metagenome | 130 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068477_11549472 | F043989 | N/A | MVTALIWKYGIYIILIWSLFESSCSSGKGNLPYHPPEFAPIYREECYSDNKNFLCMDKEKDASYTTPILYFLFMRETMEQ* |
Ga0068477_11549475 | F062843 | AGGAGG | MNIWIEYWEKSKEPSKNTHAQIREQAHWVPPDPKTVHKRFCQSREDANRYANSLQEQGYHVTIKQDNGGY* |
Ga0068477_11549476 | F013899 | N/A | LSASINSLFPDTSEIEQGETGQFELFRNGESFMKAGHGKFFDLEDVKKKLSESGQELFTNR* |
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