Scaffold Ga0068477_1171642

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068477_1171642

Scaffold Ga0068477_1171642

Overview

Basic Information
Taxon OID	3300006326 Open in IMG/M
Scaffold ID	Ga0068477_1171642 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5101
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	770
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003285	Metagenome / Metatranscriptome	496	Y
F011620	Metagenome / Metatranscriptome	289	Y
F029556	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068477_11716421	F029556	GGAG	MSMMKFDDSKIKEIRKRKEQGLPPPPEGDVVEQSKNAKGGSELIYQRIKERVPDDLWDYFQVILSRVREYEDKPKILWFQDTSKDPEVQFLKDKTYRDKFVRFVFPSDWSLEKYN
Ga0068477_11716422	F011620	GGA	MFDKILQAVLKFFGKEKPEPPTEENNESLEALERIEALDKIGESS*
Ga0068477_11716428	F003285	GAGG	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMNKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLERWRWITIGIATAIAWLLTNIIPKFLDN*

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