NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068499_1108075

Scaffold Ga0068499_1108075


Overview

Basic Information
Taxon OID3300006327 Open in IMG/M
Scaffold IDGa0068499_1108075 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1290
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)125
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044142Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0068499_11080752F044142N/AVFQELLDMRNIWLARTNWHPALEIAGPDSDIEKYVHYYTVGATMYMDARDRGWELYKKLQKMYNRVLWKRLGWLYDTFIEELQKEIGPCEYDESLGLPGFHIYEFDDAPDNRKHHRCLHYDGQWWWGKKYFQKKYVDVDYRNQLSYTFTIKAPHNGSAIALWDLKPKQGRKASEIQQRYYHPIIEKYQTLAYVEEIKKGKVIEDPWKFSLFDDDGDLEKYIPYIIPHLEGHSFWYYGMTMHQMILGDSFKKGDYRITFQGHGLKCDDKWRLFW*
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