NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068486_1233829

Scaffold Ga0068486_1233829


Overview

Basic Information
Taxon OID3300006329 Open in IMG/M
Scaffold IDGa0068486_1233829 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1336
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F008889Metagenome / Metatranscriptome326Y
F053343Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0068486_12338291F008889GGAGMYTTEQFEKDVAGLRALIKMCDDLEKENDKKTNALIDQINGENPFSW
Ga0068486_12338294F001419N/AMYEFDGYDEILKCYEGVTDQHASTSFEVGLMNDLYYQLFYNYDRN*
Ga0068486_12338296F053343N/AVLSNYITTHQQMVRWWYSKRSGTNLPRQLGLGGYNEYIKRNLSLHSYHHSIMNPQSHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREDDFINAHFQVITYS*
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