NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068483_1361016

Scaffold Ga0068483_1361016


Overview

Basic Information
Taxon OID3300006330 Open in IMG/M
Scaffold IDGa0068483_1361016 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006321Metagenome / Metatranscriptome376Y
F007606Metagenome / Metatranscriptome348Y

Sequences

Protein IDFamilyRBSSequence
Ga0068483_13610161F006321N/AETKDILDFMFSFVEAVGKAKKDGEMSWSDARYFIDPVKKLFEAVDDIEEVLPEIEDLSGEEYDELVEYVRGKWDYDEENLDWIVDTAIDAGKSILMLINMKK*
Ga0068483_13610164F007606GAGMGMAISLILTSCAKHNKDDKTHNDLGSGDKSNLPVSLTSLIEHAEYCKAIYDSGGDQKDEVAFEVKQESGISIIVIRGTANDANVLSDVDVRLVSDTR

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