Scaffold Ga0068488

Basic Information
Taxon OID	3300006331 Open in IMG/M
Scaffold ID	Ga0068488_1119703 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006331 Open in IMG/M

Scaffold ID

Ga0068488_1119703 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3891
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3891

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	1000
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

1000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002745	Metagenome	533	Y
F012921	Metagenome / Metatranscriptome	276	Y
F034603	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068488_111970310	F000245	N/A	MKTFKEYRLDRKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMEGKKGMMAFNYQLEDK*
Ga0068488_11197033	F012921	AGG	MADEFDFGFSAVSTEEFSKTQTVTEVQPSTTSSEEFDELKKKLDSISSLIQTLGDREDTSLFDETGEIVAANGEKIARVEDKIDKILAMESSQITSALEEQGSSIRAVIDEVEERKGELNEKFSGKL*
Ga0068488_11197036	F002745	GGA	MIRFKTYLREFAQQSTSDYVFDTHTGNSSSLKIPISGPMFKRIWPDTIRTTVFHTTDLAGLESLKKLEGGKKSISAFFSMMSRYMETGVATGGDVHVVVEMEADVLVSAKDDIWSVVDKKGRRWVEVGWFANATRTGPEFGKFAKDLTTLIDKLVKKHVPKEKGKPYEIWSDMKRHLKAGREGGGKRLSLVIKDYFDGVEKVIKKNKEVLSGILYGYAKGKRMTDNAWDEQIVNNIEITKVHVWKTNRDDVWGPDEIGQHITDVKKWPIKVWDASIEIEIYTREVANAEKRTMGGWARKK
Ga0068488_11197037	F034603	N/A	MKRFKEFIKEEPPKWTESLSTMLFDLPRAGLKDVLLPLSPAILKRIWPKPPRTTVFHLTDYAGIKKLKGLQGKQKSISAFFNITSRAIDDGVATAGGYAVELIGDILAAAPDDLSTRPDKTGRRWLAFSTLVNPIDFGHFGDGIGGGKKLKGMENDISEMMIEIIMKYADDPKFMPNVNKSWIALGKEYKREGKILSQIIRDYIDGMEKIMKKYSAKLKSVLLDYVKIRASKPDPDSGDLPEWDEIIVNNFKIQKIHVGWEYADDFKDDDDIEGFPFVGYEDTGSIVDYIARKVLDIKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068488_1119703

Overview

Ecosystem & Geography

Associated Families

Sequences