Basic Information | |
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Taxon OID | 3300006331 Open in IMG/M |
Scaffold ID | Ga0068488_1126784 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1899 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 1000 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012582 | Metagenome / Metatranscriptome | 279 | Y |
F042931 | Metagenome | 157 | N |
F055198 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068488_11267842 | F012582 | N/A | MLHWAEDNKTQRKEVEGIAGDYEIPQRNGVDWKEDFKFVTKLDRMLADGLDDKLKKKEMEMCNQLYKYYGNVYVKI* |
Ga0068488_11267843 | F055198 | GGA | MSRFEEASCKVLGVILFLLVVMTWLQISGCACPIPKAPLEYEYIDEVDTSNFA* |
Ga0068488_11267845 | F042931 | AGGAGG | MNKEEFYISEWDMMMKIWPNCPVDGCKNKINLNLNTGKCFPHSEGSHQWKSFKILLKNTFINRPKLLWRKMKGPIV* |
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