NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068488_1201436

Scaffold Ga0068488_1201436


Overview

Basic Information
Taxon OID3300006331 Open in IMG/M
Scaffold IDGa0068488_1201436 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1992
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005749Metagenome391Y
F013775Metagenome268Y
F015023Metagenome258Y
F041256Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0068488_12014361F005749AGGAGMKKKSWLLTMSFDEHDGSLNEINTLYHGKTKRSMVKHMNLLQDMNEHLVLSLVEISEESTYDKIIDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMSS
Ga0068488_12014363F013775GGAMVEKRQYETVKEFAKDYRTEIIPMLKSKGFTLSISTSKGSYWNDGRMNFQIKKIPSNFYVWTNEYSKYNKTEKSQKLLNTIRDRVRNLLLSTDLDIDLNFDYHKNVRYKPIPEGWDDEQNS*
Ga0068488_12014364F041256GAGMNLNDYLIENDRHIGDLVKLFSVGTVVDKVNGDTFPMLAGGAIGFDEPMNLMEMDISDDSWEWYNSLANSDREIVDEVMDELSYFEYVLGDK*
Ga0068488_12014367F015023GAGMNTTFKHIDLNDSVNDFMNHLNNNMDKPDGYSYDLVTRGSKYFKVVMNTRGSRSVYCFINKRNGEILKSAGWSAPAKGSRGSVLVPDSYTNSDWSGGWLYKIFGNVYGVIG*
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