NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068500_1092645

Scaffold Ga0068500_1092645


Overview

Basic Information
Taxon OID3300006332 Open in IMG/M
Scaffold IDGa0068500_1092645 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1890
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013821Metagenome268Y
F037942Metagenome167N
F103554Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0068500_10926454F013821N/AMATNSEARQIAIRTVTSTTGMVNEDWLALFTARSIPAGTFNERLLAYINGELSASYTDVNLALQAFATDQDDYNFSSMGTFTP*
Ga0068500_10926455F037942GGAMSQQSLRQASCREATETTGTYNEDWNKVFADSGFTTGTFSEKMLAYTNAQGSAWDNAQWDVSEWGSGPFTNVNEAMGQLGKQNGTTAPGSLWSQLGTFSAE*
Ga0068500_10926457F103554AGGAMGWLSALGGIAKLGAKLFGFMMMRKAVQADVMKEQLDDIRVADEVKKKINATTASAKRSKLRKYRKRK*
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