Basic Information | |
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Taxon OID | 3300006334 Open in IMG/M |
Scaffold ID | Ga0099675_1021330 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9264 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (82.76%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002137 | Metagenome / Metatranscriptome | 590 | Y |
F009691 | Metagenome / Metatranscriptome | 314 | Y |
F020546 | Metagenome / Metatranscriptome | 223 | Y |
F023367 | Metagenome / Metatranscriptome | 210 | N |
F058219 | Metagenome / Metatranscriptome | 135 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099675_102133016 | F020546 | GGAGG | MTTKTDPNKDFTIKEFYIKVKGDYGKEKNVRVNDMGDKLLTLITDLGWEYQRMSRSGKEVFDEIHQLLGTIKEDEVYMEI* |
Ga0099675_102133017 | F058219 | AGGAG | MSKSKKQLKKDLKYLKKHLDDNKEINQIIEHTKKIGISSAQYFCEEFVFIPDGETPEETARFHDVEYLDITEFNYHHWISNKMEDY* |
Ga0099675_102133024 | F002137 | AGGAG | MKVSELIKALSYYNDDDNITFYFLKNDTLTNCQVEDISFYTESMGVEFTIQDTSEVMEEVDV* |
Ga0099675_10213307 | F009691 | AGGAGG | MTSTLNSNDYVTFARRFVKETVDTMDIKELKSIVSDHIHEEIQEGENEYGQSGAFDEMIAWNEDVFLSVAEDFDLEFEGV* |
Ga0099675_10213308 | F023367 | GGAGG | MTKKGSKKFVFTEKFISYADVEIYAENEEHARLQFQNGNYQYYDISDFTDGHELIEVKEVELDD* |
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