Scaffold Ga0099675_1022809

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099675_1022809

Scaffold Ga0099675_1022809

Overview

Basic Information
Taxon OID	3300006334 Open in IMG/M
Scaffold ID	Ga0099675_1022809 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9222
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (38.10%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006348	Metagenome / Metatranscriptome	375	Y
F010476	Metagenome / Metatranscriptome	303	Y
F014026	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102280913	F010476	N/A	MFDYKITAYNKLGKVQETENLFCAPDEIDDVMYTLSEQYGYAEALDTMDTHCGEYGERPLSLGERRYF*
Ga0099675_102280915	F006348	GGAG	MNKKYIVENLEFDTKFKTEKEIEDLNFKRNNAYGVWDAEGRNEDERINNLFNKVQDYMGVYLCSLEFCNNRPHPLTSYM*
Ga0099675_102280919	F014026	N/A	MKHNKETYINTLVDSMSMEDFRQYVANDMASFLYYCSESEVVNEFLIKVNHTLDEQFYNKFVKQNKDSLLSGTR*

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