NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0099675_1083731

Scaffold Ga0099675_1083731


Overview

Basic Information
Taxon OID3300006334 Open in IMG/M
Scaffold IDGa0099675_1083731 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6029
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005533Metagenome / Metatranscriptome397Y
F006662Metagenome / Metatranscriptome367Y
F016980Metagenome243Y
F019152Metagenome231N
F053344Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0099675_10837311F016980AGGMKYKELLEQLRTLTKEQLELETLVFIRDKEKFVSLNNSLYFVTEFDEYEENLETDQPYFRV*
Ga0099675_10837312F019152AGGAGMEHTKGILLECNLSEEEINTVIEALSRDYVENDPEILEKEYQLQGKLREIISNFYQKLDAQKFTQIQVESIKGSTL*
Ga0099675_108373122F005533N/AGGVMSYTKNEIALETFISNTNNQFYYIGEEDDKVAPIDVKKFTEYCVAFIDSLEIER*
Ga0099675_10837315F053344AGGAGGMNRKVFPLELYRRVLKRAKLDEDFYHAIISEYIELLDEHYGIDNLEESVTDWESENPSYVDSLLTTGN*
Ga0099675_10837318F006662GAGGMRTLTTKEYELISKIYNSTDEIEASLSFEFELQNDLYYQLFHSYEETKK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.