NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099675_1090407

Scaffold Ga0099675_1090407


Overview

Basic Information
Taxon OID3300006334 Open in IMG/M
Scaffold IDGa0099675_1090407 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6380
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F003869Metagenome / Metatranscriptome464Y
F007173Metagenome / Metatranscriptome356Y
F013776Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0099675_109040716F007173AGGAGMQTITKAKISRNNLMEYIHEDRDLLMGLQDDLSDMLYATGKFSITLDEIVNEFMPFFPLYLIENEDEIKKTYPDRFDDDHLFIFDRELTPKSINLYVEWLD*
Ga0099675_109040718F013776GGAGGMKEFCFTVTKTGYMNVEADSFEDAEAKLQEEFGHLYVITDTGEELSDGWESTGEVEEV*
Ga0099675_109040719F003869GGAGGMAKRQNYKRPHFYSIGSMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEVN*
Ga0099675_10904076F001026GAGGMAKHTLELDDLELTALITHLEGQNEMMCESRLNCSNPSETPDREEVLLNMVYSKAFTIGWDAHINPKVDFDLHKNEDRIYQNKLYPQVYGQTK*
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