NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0099675_1343035

Scaffold Ga0099675_1343035


Overview

Basic Information
Taxon OID3300006334 Open in IMG/M
Scaffold IDGa0099675_1343035 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4203
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F001504Metagenome / Metatranscriptome681Y
F007173Metagenome / Metatranscriptome356Y
F020546Metagenome / Metatranscriptome223Y
F028529Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0099675_134303511F028529GGGGGMRLSKYLTENLDTKTVNLTLTFDERSELLKHLEMFDEHIDQLHPLVESVQDKLLGID*
Ga0099675_134303513F007173N/AMQTTTTKAIISRDKLMEYIYEDNRDLLMGLQDDLSDMLSATGKFSITLDEIVQNYMPFIPLHIIENEDEIKKAFPDRVTDDEYIFIYDRDMTPNEITLNVEWRD*
Ga0099675_134303514F001504GGAGMTQDTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVSNAELSMRLYDPELTENKGYYNQPEPINYYQGA*
Ga0099675_13430354F020546GGAGGMTTKTDPNQNYTINEFYIKVKGDYGKEKTVRVNDMGDKLLQLITDLGWEYQRMGRSGRQVFDEIHQLLGTIPEGEVYMEI*
Ga0099675_13430356F001479AGGAGMSKEMLFLCDVYDNWLDKNNLPHRSADDILYGENACKLTGNQSYWLESFISTWDVIVENT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.