NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068482_1164581

Scaffold Ga0068482_1164581


Overview

Basic Information
Taxon OID3300006338 Open in IMG/M
Scaffold IDGa0068482_1164581 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6947
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006364Metagenome / Metatranscriptome375Y
F007608Metagenome / Metatranscriptome348Y
F043989Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0068482_116458110F006364GGAGMEREIDNDTRKMRIINYLDYMDDKSLREISVALYNLSIRRREISNKNQKELVNESGK*
Ga0068482_11645814F043989N/AMIKYGLYIIIIWSLFESSCSSGKGNLPYHPPEFAPLYREECYSDHKNFLCMDKEKDASYTSPFIYFLFMRGTMEQ*
Ga0068482_11645819F007608AGGAGMSQENKYEKLPSSMYPKVRQQVVDRIATFEKVIEDHAAAQKEALKMVYEQLEEAKNDLKYLDEVN*
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