NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068482_1376085

Scaffold Ga0068482_1376085


Overview

Basic Information
Taxon OID3300006338 Open in IMG/M
Scaffold IDGa0068482_1376085 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1216
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015350Metagenome255Y
F025858Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0068482_13760851F025858N/AEFSSEVDCWNYYESGTGESKMLNSYGTQVLDHQGNKPDKEYMKKHRPSHREYPTRIYKNNGGWMVWLTCDIKGRYEDL*
Ga0068482_13760852F015350AGGMKIYKWLILVVLAILVGWQYDAALQKSLHEVEIRLKKFESVDLFDHSQSVDILNKKQMELQALEKELANKFAIQEKELRAQVKTFETILQKLRSELNDGLTKIERDVSTIDSVVDEKFKTLWMMINNK*
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