NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10223574

Scaffold Ga0068503_10223574


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10223574 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2703
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005400Metagenome / Metatranscriptome402Y
F005608Metagenome / Metatranscriptome395Y
F008155Metagenome / Metatranscriptome338Y
F015491Metagenome254Y
F018198Metagenome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0068503_102235743F015491N/AMKKTKRQRRVKVPSRPQVTPRKWSKKTSRIFDKQFDRFLYDELYVPTKKAWGEGDIVKYERNMYGDLK*
Ga0068503_102235744F005608GGAGMKKATIEVLEPGELIFGSPTAGKYFVRRYEDGEEMGGGFFKTKKEAQTHVREYKKSK*
Ga0068503_102235745F018198GAGMTDKKNLATVRIYINGKEMLYSHQNMVAAINSFLPYLTNDDLDEMMKTFSTLKEHRRQKEYLAHLEAKVIPIQKNRHDT*
Ga0068503_102235746F008155AGAAGMTPEYQHLAALVYDIGMKKQIEERVEAKYLKRIEYLVNANNELMYELEQCELECYGRGV*
Ga0068503_102235747F005400GGAMTREWKCTDAHPNSPQLGKNYKGFKDLTHTNMCYRCDYCDQPYQNIYWLQQIAIEYFICDRCQKYYRLTAKDMLELQYVENRQEWRDADCWPGKGFFPYPIGFDT*
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